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DiploidGenome Class Reference

Genome with multiple sets of chromosomes -- UNDER DEVELOPMENT. More...

#include <genetics.h>

Inheritance diagram for DiploidGenome:

List of all members.

Public Methods
virtual void	init ()
virtual void	addPrivateGenes (Gentainer &g, const StringMap &params)
virtual int	length () const
virtual bool	pointMutate (const MutationRate &k)
virtual void	recombine (const Genstruct &a, const Genstruct &b)
virtual double	equality (const Genstruct &other) const
virtual Genstruct *	replicate () const
virtual void	copy (const Genstruct &other)
virtual void	print (TextOStream &out) const
Protected Methods
virtual int	calc_len () const

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Detailed Description

Genome with multiple sets of chromosomes -- UNDER DEVELOPMENT.

Definition at line 611 of file genetics.h.

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Member Function Documentation

virtual void addPrivateGenes (  Gentainer &    g, const StringMap &    params )  [virtual]

Implementation for Genstruct. Reimplemented from Genome.

virtual int calc_len (    )  const [protected, virtual]

Actually calculates the true length of the genome (recursively). Reimplemented from Gentainer.

virtual void copy (  const Genstruct &    other )  [virtual]

Copies another structure to self (recursively). The other structure must be structurally EXACTLY equivalent to self (for example, replicated previously). This is cool. Reimplemented from Gentainer.

virtual double equality (  const Genstruct &    other )  const [virtual]

Compares how genotypically similar the structure is to another. The units of the distance are usually application-dependent. One might, for example, use same euclidean distance or Hamming distance measurement with all genes, but then some genes may really be irrelevant for some problem, and they may have to be weighted. Thus, implementing this method in a generic way may be rather difficult. Returns: The distance between the structures. Reimplemented from Gentainer.

virtual void init (    )  [virtual]

Implementation for Genstruct. Reimplemented from Genome.

virtual int length (    )  [virtual]

Calculates recursively the total number of genes within the genetic structure. Reimplemented from Genstruct.

virtual bool pointMutate (  const MutationRate &    k )  [virtual]

Mutates the structure. Parameters: r  Mutation rate coefficients. Returns: TRUE if an actual mutation (change on genotype) has occurred. Reimplemented from Gentainer.

virtual void print (  TextOStream &    out )  const [virtual]

Implementation for Genstruct. Reimplemented from Genome.

virtual void recombine (  const Genstruct &    a, const Genstruct &    b )  [virtual]

Makes this structure a recombination of given parent structures. If no internal recombination actualizes within the structure, the parent 'a' must always be copied. Reimplemented from Gentainer.

virtual Genstruct* replicate (    )  const [virtual]

Clones a copy of self, RECURSIVELY. It's funny how simple reproduction is nowadays. Reimplemented from Gentainer.

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The documentation for this class was generated from the following file:

• genetics.h

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