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Genome Class Reference

The highest level container of genetic information. More...

#include <genetics.h>

Inheritance diagram for Genome:

List of all members.

Public Methods
void	addking ()
int	getkings () const
virtual void	init ()
virtual void	print (TextOStream &out) const
virtual void	addPrivateGenes (Gentainer &g, const StringMap &pars)
virtual DataOStream &	operator>> (DataOStream &out) const
virtual void	check () const
Protected Attributes
int	kings

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Detailed Description

The highest level container of genetic information.

Typically the top level genstructs within the genome are recombined uniformly, to represent the independet assorment of chromosomes in biological genomes.

Definition at line 533 of file genetics.h.

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Member Function Documentation

void addking (    )  [inline]

Adds one score for an phenotype of this genome having scored the kinghood. Useful only in elitist models. Definition at line 549 of file genetics.h. References kings. Referenced by Individual::addking().

void addPrivateGenes (  Gentainer &    g, const StringMap &    pars )  [virtual]

Implementation for Genstruct. Reimplemented from Gentainer. Reimplemented in DiploidGenome. Definition at line 436 of file genetics.cc. References Gentainer::addPrivateGenes(). Referenced by SimplePopulation::SimplePopulation().

void check (    )  [virtual]

Implementation for Object. Reimplemented from Gentainer. Definition at line 450 of file genetics.cc. References Gentainer::check(), and kings. Referenced by Individual::check().

int getkings (    )  const [inline]

Returns the number of kinghoods attained so far. Useful only in elitist models. Definition at line 554 of file genetics.h. References kings. Referenced by Individual::getkings().

void init (    )  [virtual]

Implementation for Genstruct. Reimplemented from Gentainer. Reimplemented in DiploidGenome. Definition at line 431 of file genetics.cc. References Gentainer::init(), and kings. Referenced by Individual::init().

DataOStream & operator>> (  DataOStream &    out )  const [virtual]

Implementation for Object. Reimplemented from Gentainer. Definition at line 444 of file genetics.cc. References kings, and Gentainer::operator>>().

void print (  TextOStream &    out )  const [virtual]

Implementation for Genstruct. Reimplemented from Gentainer. Reimplemented in DiploidGenome. Definition at line 440 of file genetics.cc. References Gentainer::print(). Referenced by Individual::print().

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Member Data Documentation

int kings [protected]

How many times a phenotype of this genome has been the King of the Kang. Or King of the Jungle. Definition at line 539 of file genetics.h. Referenced by addking(), check(), getkings(), init(), and operator>>().

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The documentation for this class was generated from the following files:

• genetics.h
• genetics.cc

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